Supplementary data
Protein complex prediction via cost-based clustering
A. D. King, N. Przulj, and I. Jurisica
Bioinformatics, 2004
doi:10.1093/bioinformatics/bth351
Supplementary report
The Restricted Neighbourhood Search Clustering Algorithm. Available in PostScript and PDF.
Protein-protein interaction graphs and related data
- Sacchyromyces cerevisiae (yeast)
Source: von Mering, C., R. Krause, B. Snel, M. Cornell, S. G. Oliver, S. Fields, and P. Bork. Comparative assessment of large-scale data sets of protein-protein interactions. Nature 417 (6887), 399--403, 2002.
- 988 proteins, 2,455 interactions.
- 2,401 proteins, 11,000 interactions.
- 4,687 proteins, 45,000 interactions.
- 5,321 proteins, 78,390 interactions.
Functional groups used for functional homogeneity filtering.
- Drosophila melanogaster (fruitfly)
Source: Giot, L. et al. A Protein Interaction Map of Drosophila Melanogaster. Science 302 (5651), 1727--1736, 2003.
- 4,602 proteins, 4,637 interactions.
- 6,985 proteins, 20,007 interactions.
- Caenorhabditis elegans (worm)
Source: Li, S. et al. A Map of the Interactome Network of the Metazoan C. Elegans. Science 303 (5657), 540--543, 2004.
- 3,115 proteins, 5,222 interactions.