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FORMULA:  Syntax for arithmetic formulas.

Arithmetic formulas are used to specify a distribution (see dist.doc),
and by the calculator program (see calc.doc).  These formulas are
written in pretty much the usual way, with the following conventions:

1) A variable name is either a single lower-case letter (a-z) or a
lower-case letter followed by a single digit (0-9).  Note,
however, that when a formula is used to specify a distribution,
the allowed state variables are restricted (see dist.doc).

2) Function names start with an upper-case letter (eg, Sin or Sqrt).

3) As usual, addition and subtraction (+ and -) have lowest
precedence, with multiplication and division (* and /) having
higher precedence, and exponentiation (^) having highest
precedence.  Evaluation is otherwise left to right.

4) The multiplication operator can be omitted.  Note, however, that
x6 is a variable name, not x*6 (but x 6 and 6x are products).

5) Only positive integer constants are allowed as exponents (eg,
x^2 is allowed, but not x^y or x^0.5).

6) Three kinds of brackets can be used: (), [], and {}.  There's no
difference in their effects, but they must be properly matched.

7) Scientific notation uses "E", not "e" - eg, 2.1E-10, not 2.1e-10.

The constant Pi=3.14159... is defined.  Use Exp(1), defined below, to
get the value of e=2.71828...

The following univariate functions are known:

Sin   Cos   Tan   Log   Exp     Abs   Theta  Delta
Sinh  Cosh  Tanh  Sqrt  LGamma  Frac  Sign

These compute the obvious things, except as follows:

LGamma  Computes the log of the Gamma function.

Frac    Computes the fractional part of a number (eg, Frac(2.7) is
0.7, Frac(3.0) is 0, and Frac(-0.1) is 0.9).

Sign    Finds the sign of its argument, -1 or +1, or 0.

Theta   Has the value 1 for non-negative arguments, 0 for negative
arguments.

Delta   Has the value 1 for an argument of zero, 0 for non-zero
arguments.

A special function LogSumExp, which takes an indefinite number of
arguments, is also provided.  It computes the log of the sum of the
exponentials of its arguments.  This is done in such a way as to avoid
overflow whenever the final result is within range.  For example
LogSumExp(1000,2000,1500) evaluates to 2000 (or very close to it),
without overflow occurring.

The following functions return minus the log of the probability
density for a quantity with respect to some distribution:

Normal  Gaussian  ExpGamma  ExpGamma2

The Normal (equivalently, Gaussian) function computes minus the log of
the probability density for the normal distribution with the given
mean and variance.  That is, Normal(x,m,v) is equivalent to

Log(2*Pi*v)/2 + (x-m)^2/(2*v)

The ExpGamma function computes minus the log of the probability
density for a quantity whose exponential has the Gamma distribution
with the given shape and mean.  ExpGamma(x,s,b) is equivalent to

- s*Log(b) + LGamma(s) + Exp(x)*b - s*x

ExpGamma2(x,a,m) is an alternative parameterization, defined by

ExpGamma2 (x, a, m) = ExpGamma (x, a/2, (a/2)/m)

This is closer to the way priors are specified for neural network and
other models.  For example, the log of a hyperparameter whose prior is
specified by "5:3" has the ExpGamma2(3,1/5^2) distribution.

If the first parameter of one of these density functions is a
variable, it can be written as follows instead:

x ~ Normal(m,v)     is equivalent to   Normal(x,m,v)
x ~ Gaussian(m,v)   is equivalent to   Gaussian(x,m,v)
x ~ ExpGamma(s,b)   is equivalent to   ExpGamma(x,s,b)
x ~ ExpGamma2(a,m)  is equivalent to   ExpGamma2(x,a,m)

Use of this form can allow random number generation by some programs.

Errors in computations (eg, division by zero) are handled in whatever
way C handles them.  Multiplications and divisions in which the first
operand evaluates to zero evaluate to zero without evaluating the
second operand being evaluated.  For example, 0*Log(0) will evaluate
to zero, whereas Log(0)*0 might generate an error.  (However, this
shortcut does not apply when derivatives are also being computed.)

When formulas are given as arguments to commands, they must often be
quoted, to prevent the shell from interpreting the special characters
they contain.

The detailed syntax of formulas is as follows, with | indicating
alternatives, [] indicating optional parts, and {} indicating parts
that can occur zero or more times).

<formula>   ::= [ <term> ] { <plusminus> <term> }
<plusminus> ::= "+" | "-"

<term>      ::=  <factor> { <timesdiv> <factor> }
<timesdiv>  ::= [ "*" ] | "/"

<factor>    ::= <prefactor> [ "^" <integer> ]
<prefactor> ::= "(" <formula> ")" | "[" <formula> "]" | "{" <formula> "}"
| <variable> | <constant> | <number>
| <ufunction> <prefactor> | <dfunction> <arglist>
| <variable> ~ <dfunction> <arglist>
| "LogSumExp" <arglist>
<arglist>   ::= "(" <formula> { "," <formula> } ")"
| "[" <formula> { "," <formula> } "]"
| "{" <formula> { "," <formula> } "}"

<ufunction> ::= <one of the univariate functions listed above>
<dfunction> ::= <one of the log density functions listed above>
<variable>  ::= <lower-case-letter> [ <digit> ]
<constant>  ::= Pi
<number>    ::= <integer> [ "." { <digit> } ] [ <exponent> ]
| "." <digit> { <digit> } [ <exponent> ]
<exponent>  ::= "E" [ <plusminus> ] <integer>
<integer>   ::= <digit> { <digit> }

Spaces may be inserted anywhere except inside variable names, function
names, or numbers.

See calc.doc for some examples of formulas.
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